Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49107468_49111513_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49107468 - 49111513

Intron Length:

4046

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAATCTT

5'SS Class:

strong_major

3'SS Sequence:

GTAATATTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

ACTTCTAAAAAC

Flanking Amino Acid:

ERRYTAVVLNRLIKEAGKQD

Intron Amino Acid Position:

459

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

84.2

33.9

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

70.4

0.46

43.7

Minor 5ss

39.5

-1.2

3.2

58.6

45.9

Minor BPS

46.4

-0.2

58.6

40.4

Associated Gene:

Gene:

DICER1

Ensembl Gene ID:

ENSAPLG00000012407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012965

49081587 - 49128400

46814