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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49114207_49115480_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
49114207 - 49115480
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GCCCTCAATTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTGCCCTCAATT
Flanking Amino Acid:
ETATDLVVLDRYTSQPCEIV
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
54.9
0.11
1.1
57.2
36.8
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
68.1
0.65
1.5
81.94
39.6

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814