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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49115642_49116514_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49115642 - 49116514
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTTTC
5'SS Class:
major
3'SS Sequence:
GTTTAATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTGGTTTAATT
Flanking Amino Acid:
QDHPYREIMKICENYPSCPR
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
73.2
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.6
0.69
0.9
73.3
40.8
Minor 5ss
38.8
-1.3
3.1
52.5
44.7
Minor BPS
58
0.33
1.9
74.65
43.4

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814