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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49120095_49127358_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
49120095 - 49127358
Intron Length:
7264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GACTATCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
79.1
37.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84
0.76
0.6
80.4
25.1
Minor 5ss
44.3
-0.6
2.8
59.1
45.3
Minor BPS
47
-0.2
1.8
54.89
37.8

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814