Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49127460_49128334_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

49127460 - 49128334

Intron Length:

875

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAATG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTTTTAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATACTTCAGA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

77.9

36.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.4

0.71

0.9

86.5

24.9

Minor 5ss

36.4

-1.5

3.1

48.5

47.2

Minor BPS

49.7

-0

2.2

69.13

Associated Gene:

Gene:

DICER1

Ensembl Gene ID:

ENSAPLG00000012407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012965

49081587 - 49128400

46814