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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49162091_49163036_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49162091 - 49163036
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
ATGTACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATAAATTAAAA
Flanking Amino Acid:
EEIANCHEFYRTSDNDSNIY
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.3
0.5
1
67.6
42.7
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
49.6
-0
1.9
65.77
39.2

Associated Gene:

Gene:
CLMN
Ensembl Gene ID:
ENSAPLG00000012967
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013492
49159634 - 49176129
16496