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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49163222_49164251_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49163222 - 49164251
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TTAATTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTTCTTAATT
Flanking Amino Acid:
EDTTVLQHSEAVDFNHLDDL
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
74.4
0.55
1
70.3
39.8
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
CLMN
Ensembl Gene ID:
ENSAPLG00000012967
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013492
49159634 - 49176129
16496