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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49165563_49166981_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49165563 - 49166981
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCATCACTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCTTTAATG
Flanking Amino Acid:
FLEHFPELEGEDFADPDKEL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
76.2
39.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.6
0.51
0.9
66
34.6
Minor 5ss
39.6
-1.2
3.4
53.7
43.8
Minor BPS
77.8
0.74
1.2
75.88
36.1

Associated Gene:

Gene:
CLMN
Ensembl Gene ID:
ENSAPLG00000012967
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013492
49159634 - 49176129
16496