Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49170207_49171442_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49170207 - 49171442

Intron Length:

1236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAAAA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTGTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

CTTTTGTTACAG

Flanking Amino Acid:

LIWNIILFFQIKELTGNLNR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

78.8

29.6

Major BPS

73.5

0.58

79.3

29.4

Major PPT

84.5

0.78

0.8

78.9

33.1

Minor 5ss

32.9

-2

2.9

40.3

45.4

Minor BPS

44.6

-0.5

2.4

55.39

46.1

Associated Gene:

Gene:

CLMN

Ensembl Gene ID:

ENSAPLG00000012967

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013492

49159634 - 49176129

16496