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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49171536_49174390_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49171536 - 49174390
Intron Length:
2855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTAATTT
Flanking Amino Acid:
KALKFLEDSNVKLVSIDAAE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.5
0.73
0.8
76.6
31.5
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
55.2
0.24
1.9
78.46
39

Associated Gene:

Gene:
CLMN
Ensembl Gene ID:
ENSAPLG00000012967
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013492
49159634 - 49176129
16496