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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49174475_49176033_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49174475 - 49176033
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTAAACT
Flanking Amino Acid:
LLEVLSGQKLMHEYKSSTHR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.2
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.7
81.2
36.5
Minor 5ss
35
-1.7
3.5
45.3
45.2
Minor BPS
61.6
0.44
1.7
75.92
41.3

Associated Gene:

Gene:
CLMN
Ensembl Gene ID:
ENSAPLG00000012967
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013492
49159634 - 49176129
16496