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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49260401_49271163_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
49260401 - 49271163
Intron Length:
10763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTCAG
5'SS Class:
major
3'SS Sequence:
TTCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
64.9
42.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.3
0.91
0.7
88.7
27
Minor 5ss
33.7
-1.9
2.9
40.4
45.7
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
SYNE3
Ensembl Gene ID:
ENSAPLG00000012970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013532
49260323 - 49325341
65019