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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49271381_49283655_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49271381 - 49283655

Intron Length:

12275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TTATGTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTTAT

U12 Branch Point Sequence:

TTTGCTTTATGT

Flanking Amino Acid:

SSEEPDRFRKKRSGGVCSFL

Intron Amino Acid Position:

1071

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

67.7

37.6

Major BPS

66.1

0.4

1.3

59.6

46.8

Major PPT

84.1

0.77

0.8

81.4

Minor 5ss

35.9

-1.6

3.3

46.1

49.1

Minor BPS

56.4

0.28

79.06

43.7

Associated Gene:

Gene:

SYNE3

Ensembl Gene ID:

ENSAPLG00000012970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013532

49260323 - 49325341

65019