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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49278440_49283655_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49278440 - 49283655
Intron Length:
5216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTGCTTTAATG
Flanking Amino Acid:
SSEEPDRFRKFQYVEVTNQT
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.7
37.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.9
0.65
0.9
69.8
40.9
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
66.2
0.37
1.5
66.31
42.6

Associated Gene:

Gene:
SYNE3
Ensembl Gene ID:
ENSAPLG00000012970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025753
49277784 - 49325341
47558