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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49292033_49293959_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49292033 - 49293959

Intron Length:

1927

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGAGA

5'SS Class:

major

3'SS Sequence:

TTTATCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTTCTCTCAGCT

Flanking Amino Acid:

SVVSAIRDYQSVRRKTSKLS

Intron Amino Acid Position:

602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.7

0.49

1.1

62.9

43.2

Major BPS

84.4

0.85

1.1

34.5

Major PPT

87.1

0.83

0.7

81.5

30.3

Minor 5ss

29.6

-2.3

3.4

39.5

46.1

Minor BPS

59.2

0.37

1.8

81.74

39.5

Associated Gene:

Gene:

SYNE3

Ensembl Gene ID:

ENSAPLG00000012970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025753

49277784 - 49325341

47558

ENSAPLT00000013532

49260323 - 49325341

65019