Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49294097_49295314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49294097 - 49295314

Intron Length:

1218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TGTTTGTTATTT

Flanking Amino Acid:

AFVAQWRKCNATRAVLAAEE

Intron Amino Acid Position:

557

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

75.2

35.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

0.41

1.2

72.3

Minor 5ss

-0.8

2.8

57.2

40.7

Minor BPS

50.7

0.1

2.2

75.8

41.6

Associated Gene:

Gene:

SYNE3

Ensembl Gene ID:

ENSAPLG00000012970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025753

49277784 - 49325341

47558

ENSAPLT00000013532

49260323 - 49325341

65019