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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49304427_49324821_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49304427 - 49324821

Intron Length:

20395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

CTTATCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TGCTTCTTATCC

Flanking Amino Acid:

SGAARGGRRGVSSNAMTQQL

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

63.5

42.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

84.4

0.77

0.8

81.2

30.7

Minor 5ss

27.1

-2.6

31.9

42.5

Minor BPS

63.9

0.42

1.6

70.41

41.2

Associated Gene:

Gene:

SYNE3

Ensembl Gene ID:

ENSAPLG00000012970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025753

49277784 - 49325341

47558

ENSAPLT00000013532

49260323 - 49325341

65019