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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4932920_4935736_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4932920 - 4935736
Intron Length:
2817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTTACATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATTCTTTACAT
Flanking Amino Acid:
PCPPDGGIRKDLCKESPVIA
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.7
0.67
0.9
74.6
34.3
Minor 5ss
41.7
-0.9
2.5
45.6
42.8
Minor BPS
65.5
0.56
1.7
82.33
38.9

Associated Gene:

Gene:
KCNC1
Ensembl Gene ID:
ENSAPLG00000005789
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005993
4833645 - 4935858
102214