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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49476730_49480430_F

Intron Information:

Intron Rank:
143316
Intron Class:
major
Intron Phase:
Intron Coordinates:
49476730 - 49480430
Intron Length:
3701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTCTCTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.8
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
33.5
-1.9
3.4
45.9
43.3
Minor BPS
54.9
0.15
2
71.87
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027198
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022635
49476558 - 49502788
26231