About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49480540_49502220_F

Intron Information:

Intron Rank:
143317
Intron Class:
major
Intron Phase:
Intron Coordinates:
49480540 - 49502220
Intron Length:
21681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.1
0.56
0.9
67.1
38.2
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
67.7
0.63
1.6
83.92
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027198
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022635
49476558 - 49502788
26231