About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49514020_49514357_F

Intron Information:

Intron Rank:
139101
Intron Class:
major
Intron Phase:
Intron Coordinates:
49514020 - 49514357
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTGG
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.5
43.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
42
-0.9
2.4
50.4
45.9
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024893
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034092
49514000 - 49516903
2904
ENSAPLT00000025677
49514000 - 49518845
4846