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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49549009_49549634_R

Intron Information:

Intron Rank:
134138
Intron Class:
major
Intron Phase:
Intron Coordinates:
49549009 - 49549634
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.5
0.71
0.8
76.1
32.2
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
69.3
0.69
1.6
80.61
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019446
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033458
49548929 - 49550165
1237