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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49550757_49557074_F

Intron Information:

Intron Rank:
142070
Intron Class:
major
Intron Phase:
Intron Coordinates:
49550757 - 49557074
Intron Length:
6318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
ACACAATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.9
0.4
1
62.6
42.3
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026472
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034622
49549547 - 49557308
7762