About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49550757_49583799_F

Intron Information:

Intron Rank:
142067
Intron Class:
major
Intron Phase:
Intron Coordinates:
49550757 - 49583799
Intron Length:
33043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTAATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTGCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
75.3
0.57
0.8
69.6
35.3
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
64.4
0.53
1.7
84.17
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026472
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024901
49549547 - 49583968
34422