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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49561819_49562500_F

Intron Information:

Intron Rank:
142066
Intron Class:
major
Intron Phase:
Intron Coordinates:
49561819 - 49562500
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCAGT
5'SS Class:
major
3'SS Sequence:
TCTTTTGCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTAATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
68.8
43.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.7
0.69
0.8
75.9
32.8
Minor 5ss
41.2
-1
2.9
57.9
46.4
Minor BPS
59.7
0.38
1.5
73.04
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026472
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022859
49549547 - 49563017
13471