Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49717681_49718549_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49717681 - 49718549

Intron Length:

869

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAATC

5'SS Class:

strong_major

3'SS Sequence:

CTCCACCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TTTTTTCTACTC

Flanking Amino Acid:

TASAIRPESNGVLDDRSQTQ

Intron Amino Acid Position:

1435

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.9

80.7

31.6

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

70.8

0.47

0.8

61.1

34.7

Minor 5ss

38.2

-1.3

3.1

49.9

40.6

Minor BPS

51.3

0.02

1.9

69.85

36.3

Associated Gene:

Gene:

ATG2B

Ensembl Gene ID:

ENSAPLG00000007773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028864

49705626 - 49746089

40464

ENSAPLT00000008192

49623500 - 49746089

122590