About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49727878_49728914_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49727878 - 49728914
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAATAA
5'SS Class:
major
3'SS Sequence:
TCTCCAATATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTGCATAACT
Flanking Amino Acid:
MTSSDNFDWPRIVLKINPLA
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.6
33.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
70
0.45
1
67.8
36.5
Minor 5ss
37.1
-1.5
3.2
47.5
48
Minor BPS
69.4
0.69
2
93.11
35.2

Associated Gene:

Gene:
ATG2B
Ensembl Gene ID:
ENSAPLG00000007773
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028864
49705626 - 49746089
40464
ENSAPLT00000008192
49623500 - 49746089
122590