Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49730390_49730561_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49730390 - 49730561

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

ATTTTAGTACTT

Flanking Amino Acid:

YKHSDNRGPQGSQGRLSSIP

Intron Amino Acid Position:

660

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

93.4

0.98

0.6

92.1

18.5

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

-0.3

2.3

70.57

Associated Gene:

Gene:

ATG2B

Ensembl Gene ID:

ENSAPLG00000007773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028864

49705626 - 49746089

40464

ENSAPLT00000008192

49623500 - 49746089

122590