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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49731352_49732280_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49731352 - 49732280
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTTCATAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATAATT
Flanking Amino Acid:
FAEACSHDHLRFIGTGIKVS
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77.4
0.62
0.9
75
38.5
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
70.9
0.73
1.5
87.01
32

Associated Gene:

Gene:
ATG2B
Ensembl Gene ID:
ENSAPLG00000007773
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028864
49705626 - 49746089
40464
ENSAPLT00000008192
49623500 - 49746089
122590