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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49732543_49732700_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49732543 - 49732700
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATTGCTGAAAA
Flanking Amino Acid:
VVHQTSLRRTSIPSRSVSVD
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
55.3
0.16
2
71.21
40.2

Associated Gene:

Gene:
ATG2B
Ensembl Gene ID:
ENSAPLG00000007773
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028864
49705626 - 49746089
40464
ENSAPLT00000008192
49623500 - 49746089
122590