Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49738304_49739170_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49738304 - 49739170

Intron Length:

867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTCTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

CCATCTTTATTT

Flanking Amino Acid:

SGTALEIRIERTMYCDETAD

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

78.5

35.4

Major BPS

83.9

0.84

73.9

41.3

Major PPT

84.7

0.78

0.8

77.2

37.1

Minor 5ss

34.3

-1.8

3.3

49.5

46.5

Minor BPS

57.2

0.3

1.6

67.81

Associated Gene:

Gene:

ATG2B

Ensembl Gene ID:

ENSAPLG00000007773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028864

49705626 - 49746089

40464

ENSAPLT00000008192

49623500 - 49746089

122590