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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49752499_49753628_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49752499 - 49753628
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTTTTCTAACA
Flanking Amino Acid:
KPCFAEETYEVSSQKELLSY
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.7
0.74
0.8
77.4
30.8
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
64.8
0.46
1.6
76.34
34.4

Associated Gene:

Gene:
AK7
Ensembl Gene ID:
ENSAPLG00000007594
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029213
49751728 - 49775041
23314
ENSAPLT00000007905
49751728 - 49775041
23314