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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49755383_49757416_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49755383 - 49757416
Intron Length:
2034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTACTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTACTTCACA
Flanking Amino Acid:
EKLILKLGKTNKHVFSTYVV
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
67.7
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.5
0.8
0.8
80.2
31.5
Minor 5ss
36.9
-1.5
3
51.4
45.2
Minor BPS
69.2
0.6
1.9
84.46
35.5

Associated Gene:

Gene:
AK7
Ensembl Gene ID:
ENSAPLG00000007594
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029213
49751728 - 49775041
23314
ENSAPLT00000007905
49751728 - 49775041
23314