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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4975737_4998336_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4975737 - 4998336
Intron Length:
22600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GAGCCCAAAAAT
Flanking Amino Acid:
CGSEHNLAVVACIFRSCVCR
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
88.2
0.86
0.6
88.7
20.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
43.9
-0.3
2
58.21
43.7

Associated Gene:

Gene:
SERGEF
Ensembl Gene ID:
ENSAPLG00000005876
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006096
4975675 - 5081506
105832