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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49773808_49774907_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49773808 - 49774907
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTGAAAATAACT
Flanking Amino Acid:
IRPDDPVDFLAEYLFRNNPD
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.1
35.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.5
0.78
0.7
80
32
Minor 5ss
37.2
-1.5
3.2
44.7
44.3
Minor BPS
47.7
-0
2.1
72.53
43.3

Associated Gene:

Gene:
AK7
Ensembl Gene ID:
ENSAPLG00000007594
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029213
49751728 - 49775041
23314
ENSAPLT00000007905
49751728 - 49775041
23314