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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49777085_49786153_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49777085 - 49786153
Intron Length:
9069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTCGG
5'SS Class:
major
3'SS Sequence:
TTGCCTTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTATCTAATT
Flanking Amino Acid:
MPFPVTTQGSQT
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
58.3
46.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.9
0.54
0.9
74.4
35
Minor 5ss
36.2
-1.6
3
47.3
42.4
Minor BPS
63.1
0.49
1.8
85.6
34.5

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040329
49777077 - 49818484
41408
ENSAPLT00000029727
49777077 - 49815688
38612
ENSAPLT00000006970
49777077 - 49817937
40861