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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49786325_49786926_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49786325 - 49786926
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
GTTTTATCAATA
Flanking Amino Acid:
VFEEEEELQRRILILGKLNN
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
71.5
0.48
0.9
67.5
38.1
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
54.9
0.15
1.8
69.41
36.7

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040329
49777077 - 49818484
41408
ENSAPLT00000029727
49777077 - 49815688
38612
ENSAPLT00000006970
49777077 - 49817937
40861