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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49788820_49792710_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49788820 - 49792710
Intron Length:
3891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
KQQEEVKDLRIDILFARLAL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.3
35.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
37.6
-1.4
3.1
39.8
46.2
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029727
49777077 - 49815688
38612