Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49790702_49792710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49790702 - 49792710

Intron Length:

2009

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

TTTTTTTTTAAG

Flanking Amino Acid:

VIKLCFDGIEIDILFARLAL

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

79.3

34.3

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

36.2

-1.6

3.4

51.2

45.7

Minor BPS

56.3

0.05

1.8

67.7

39.9

Associated Gene:

Gene:

PAPOLA

Ensembl Gene ID:

ENSAPLG00000006645

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040329

49777077 - 49818484

41408

ENSAPLT00000006970

49777077 - 49817937

40861