About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49794050_49794144_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49794050 - 49794144
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTTGATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCCTTCTTGATT
Flanking Amino Acid:
TLRAIKLWAKRHNIYSNILG
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
72.7
44.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.6
0.64
0.9
72.3
36.8
Minor 5ss
42.5
-0.8
2.9
57
40.9
Minor BPS
70.1
0.71
1.2
77.76
39.6

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040329
49777077 - 49818484
41408
ENSAPLT00000029727
49777077 - 49815688
38612
ENSAPLT00000006970
49777077 - 49817937
40861