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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49794284_49795467_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49794284 - 49795467
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTTTTTGAACA
Flanking Amino Acid:
VHKFFLVFSKWEWPNPVLLK
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
78.8
0.65
1
76.7
36.2
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
68.2
0.57
1.4
75.34
36.3

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040329
49777077 - 49818484
41408
ENSAPLT00000029727
49777077 - 49815688
38612
ENSAPLT00000006970
49777077 - 49817937
40861