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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49797085_49797961_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49797085 - 49797961
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
RMVMVEEFKQGLAITDEILL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.9
75.7
38.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040329
49777077 - 49818484
41408
ENSAPLT00000029727
49777077 - 49815688
38612
ENSAPLT00000006970
49777077 - 49817937
40861