Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49803591_49805179_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49803591 - 49805179

Intron Length:

1589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TAATTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTAAT

U12 Branch Point Sequence:

TTTAGTGTAATT

Flanking Amino Acid:

SFPAPKENPDKEEYRTMWVI

Intron Amino Acid Position:

429

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

33.6

Major BPS

66.7

0.41

1.4

69.7

44.2

Major PPT

85.8

0.81

0.8

Minor 5ss

40.4

-1.1

2.9

48.9

41.5

Minor BPS

48.4

-0

2.4

75.87

41.7

Associated Gene:

Gene:

PAPOLA

Ensembl Gene ID:

ENSAPLG00000006645

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040329

49777077 - 49818484

41408

ENSAPLT00000029727

49777077 - 49815688

38612

ENSAPLT00000006970

49777077 - 49817937

40861