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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49808740_49810089_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49808740 - 49810089
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATGAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTTACTTACGT
Flanking Amino Acid:
SPLNSSGSSQGRSSPAPAVT
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
67.7
39
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
31.2
-2.1
3.1
31.3
42.6
Minor BPS
53
0.17
2.1
76.43
46

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040329
49777077 - 49818484
41408
ENSAPLT00000029727
49777077 - 49815688
38612
ENSAPLT00000006970
49777077 - 49817937
40861