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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49815581_49815779_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49815581 - 49815779
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGTT
5'SS Class:
major
3'SS Sequence:
ATGTGCATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATTGAATG
Flanking Amino Acid:
ETLQTLQAPQLNMYGLPYKL
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
69.9
40.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
67
0.38
1
60
40.9
Minor 5ss
34.2
-1.8
3.9
55.6
48.6
Minor BPS
53.8
-0
1.7
60.83
41.6

Associated Gene:

Gene:
PAPOLA
Ensembl Gene ID:
ENSAPLG00000006645
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006970
49777077 - 49817937
40861