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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49862519_49863954_R

Intron Information:

Intron Rank:
144814
Intron Class:
major
Intron Phase:
Intron Coordinates:
49862519 - 49863954
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGCACCTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
79
0.65
0.9
72.3
36.9
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
49
-0
1.9
61.24
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025290
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035963
49862438 - 49865973
3536