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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49884611_49921538_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49884611 - 49921538
Intron Length:
36928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTACCTGCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
CTCTCCCTACCT
Flanking Amino Acid:
MQGPLERVKMPYIKKTS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
71
0.47
0.9
61.6
39.8
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
55.7
0.26
2
76.28
46.2

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006567
49884589 - 49939391
54803