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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49900170_49921538_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49900170 - 49921538

Intron Length:

21369

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAACA

5'SS Class:

strong_major

3'SS Sequence:

CTACCTGCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCTAC

U12 Branch Point Sequence:

CTCTCCCTACCT

Flanking Amino Acid:

PLYSKVLLEQVKMPYIKKTS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

76.3

32.4

Major BPS

48.5

-0

1.3

46.3

38.4

Major PPT

0.47

0.9

61.6

39.8

Minor 5ss

33.8

-1.8

2.8

44.2

Minor BPS

55.7

0.26

76.28

46.2

Associated Gene:

Gene:

VRK1

Ensembl Gene ID:

ENSAPLG00000006288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039532

49899184 - 49947806

48623

ENSAPLT00000023857

49899184 - 49939391

40208