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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49921701_49923233_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49921701 - 49923233
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCCTTTTTAACA
Flanking Amino Acid:
GQGGFGRLYLADDNSSKSIG
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.8
0.74
0.8
80
30.6
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
73.2
0.72
1.2
73.92
38.7

Associated Gene:

Gene:
VRK1
Ensembl Gene ID:
ENSAPLG00000006288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023857
49899184 - 49939391
40208
ENSAPLT00000006567
49884589 - 49939391
54803
ENSAPLT00000039532
49899184 - 49947806
48623