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Intron Name: Anas_platyrhynchos_platyrhynchos_5_49923290_49927718_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49923290 - 49927718

Intron Length:

4429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

AATTGTCTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CAGTTTTTAACT

Flanking Amino Acid:

GSDAPYVVKVEPSQNGPLFT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

64.3

41.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

65.9

0.36

1.1

64.3

Minor 5ss

31.4

-2.1

3.1

36.3

41.6

Minor BPS

70.1

0.71

1.2

76.03

41.2

Associated Gene:

Gene:

VRK1

Ensembl Gene ID:

ENSAPLG00000006288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039532

49899184 - 49947806

48623

ENSAPLT00000023857

49899184 - 49939391

40208

ENSAPLT00000006567

49884589 - 49939391

54803